NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0066875

Scaffold Ga0326724_0066875


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0066875 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2496
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005111Metagenome / Metatranscriptome411Y
F030640Metagenome / Metatranscriptome184Y
F074282Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0066875_1004_1279F005111GAGGMTTGFDEFQNRIHDLAERENECDDLFEEIKNGNGEKSLRYLALRDSCKELRREIFRNAKAAGLTRERIKTEIKEARNRTPPLTRSRLKKKL
Ga0326724_0066875_1759_1968F030640N/AMSEPSPVTEWMPSEGLNYVDILDVQTTRIRNMQMDHLGSGLYIDRRTLTKYDYEEDAKGYRHYFEVRKS
Ga0326724_0066875_1965_2204F074282N/ALEKDDAIFYALLRMGHECTHAIIPHPDPQSKKVENAWLIEVEHGHDDLGKHGQYTFCYRIVDDPKRAVGECRKGLNDLT
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