NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0136956

Scaffold Ga0326724_0136956


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0136956 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000758Metagenome / Metatranscriptome903Y
F010440Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0136956_393_1040F010440AGGAMTVAEAEEKLETITRNLASSEISPIQRHKWEAQMARCYRIIQRARQQAHRSLASFAGTLLDMIGDTVFDQNQNAAIITAAHLIRCASIEQLAVAVPAAIRETPTCDTRPTRVKCPEFKEIVVCLLSLDNITFSCERNIAIRTALHLSNIVGRHQIYRSVRRAQANTGELGPKGIVNRLAEICSAYRPPKSGSSPSASGSKKMKSFTTQSAAESPQ
Ga0326724_0136956_3_263F000758N/AMLYNTSQKGSDMTPPKKIAARTKRRIVAPLEKRTQLRLTIDSKFTKAHFNQLFAVLGIRKKNALAEHIIMNFKTKAAQAQLVAFYNG
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