NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0168873

Scaffold Ga0335010_0168873


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0168873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0168873_2_535F007029N/AAYIEDLDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLQADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCTHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV
Ga0335010_0168873_711_1220F029049N/AMSRVAKVILDRSQEITAHRVGLERTIIRNADPTDASNFGQAYKNWHELVWQESESAGAEIAVANYFGDYGFVPAIDNAHDTADVGENIEVKWTKHANGHLIVQNRGPGRPNDVAILVTGFSPVYVLLGWMPISMAKQPRYKHTYQDNYWVPRANLFEMQYLKRSNYGDV
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