NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0516279

Scaffold Ga0335010_0516279


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0516279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058806Metagenome / Metatranscriptome134Y
F100544Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0516279_2_340F058806N/AMSWQIPQQIEQDIIAGKAQYRSFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGLIQTDSVAADPQLMRETLRWFETQQISFYTGTDFYPFIHHVNLIQSSYYWTAENARQFS
Ga0335010_0516279_411_623F100544N/AVTLTINNDVAIEDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL

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