NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0002013

Scaffold Ga0335012_0002013


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0002013 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12883
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004761Metagenome / Metatranscriptome424Y
F016388Metagenome / Metatranscriptome247N
F054000Metagenome140Y
F102851Metagenome / Metatranscriptome101N
F104779Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0002013_12236_12481F016388N/AMNSTIAKALDLGQRLISLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSAEISAAFGTKTKKK
Ga0335012_0002013_12642_12872F102851N/AVDELSEEQLEAFTEVIQEAPTEIKQAFEKTIDIFGSKFDDYVPTGSNVPVRTRRTLVVIGSLLTMLPSVHIKTGKS
Ga0335012_0002013_1951_2313F054000N/AMNAYANFLSQQRGNRGRRDMMQQYDKAQPQVVSGYSRRGLVGPNVKSGIFARGLQDFAKQRAQSFGDYDRGIAEEQRGYDLGEAARLEAFKNQLADLEAEKAQTIADAARQLYARRAGAF
Ga0335012_0002013_4458_5123F004761N/AMVRNISDLDTTDLPNSIIDDAVKEAFQRVIVLERRWPKYQETYTFNTVANQRPYTISTIGDIREVISLVDTSSDGSRLTMIPYDNAEDIWLGNTDVPSRPYFYAVWDGQLHLYAKPDGIYPITVRAYRNPVYTWLSTITDPIDCDEWFHILFAYFVLARVYQRQEDPELSAMYLKSFEEGVAMARRDLMKTPSARPLIVSGGRQYPTMRRWLQTLGATLGT
Ga0335012_0002013_5153_5368F104779AGGAMKNAQLSGAYYGEPISGIRPSVEVPGSRQAPPSGPYLGRGNFCAANEDTCTGRKAKGTDYCMGHLRNRGEA
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