NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0003966

Scaffold Ga0335012_0003966


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0003966 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9103
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F005814Metagenome389Y
F006463Metagenome / Metatranscriptome372N
F009004Metagenome / Metatranscriptome324Y
F009958Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0003966_3134_3316F009004N/AMKTEFIKVIEFLEVQQQENKYSANQLHLIIQNLCTFLDDEQLQEVENLFNQMNKSNEKFN
Ga0335012_0003966_3439_3771F009958N/AMENRNLEFWNKGWELTYEFLGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLQHYNFWEWKASNDESNYNFYHEL
Ga0335012_0003966_4028_4312F006463N/AMKAGTIYDQLDWWQRQWRGSFDLHLYLEICRIKKNEQIKFKEMKRYKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK
Ga0335012_0003966_6835_7125F005814N/AMELELLSSRINLNHTCLKLEVSIEDIKTKHPNRTDLITSMEQSLHEIKKAMLVYQTLEKEFRATRQINFDLQRINLEQMQEIQNFKRQIELNNIDL
Ga0335012_0003966_997_1425F001808N/AMGKLFILIISILLYSCSAQYHLNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIELKREYKIKVKTIYKDKVVEKAQARAEGKKNQPKGNLNLLFVGVGIGLLLSYLWKYAKKSLI
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