NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0103504

Scaffold Ga0335012_0103504


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0103504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017998Metagenome237Y
F031098Metagenome / Metatranscriptome183N
F037728Metagenome167Y
F038234Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0103504_1075_1236F031098N/AMKTYYDIAIHTATKDVVTIKGVSYSQMMKIANDNPTLLKVEIVREYSKRISKY
Ga0335012_0103504_249_488F017998N/AMNLERLDLEKYEVLELERSNTIADPLYQQWMSELGVSSSYWDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSVFK
Ga0335012_0103504_3_236F038234N/AMLTIQNIDSLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGNRHYLPIESIGD
Ga0335012_0103504_500_868F037728N/AMKRLEIKNFTQRMDEMYSDFFEVKHSSDSGDKYIIGLGIRDVVSFKQWGPKYYKMSINKVTNEDGNYGIWLWDVGENISYPMSIMPANISSLSEFTSFLNHTLKLANDGDFSGDVGNRIDNK
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