NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0000575

Scaffold Ga0335022_0000575


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0000575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20985
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (19.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F009267Metagenome / Metatranscriptome320N
F023103Metagenome211N
F046247Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0000575_13943_14701F023103GAGMKDYAEIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGRFDIVETILRNIGFLNKWTGMEVISGSKIKSVHNQARNKTTGRTKSRGSKLFIASVSDQETYISEVQKRVGISKGGWADCATQLKKVNKGGLLTNFPTWVKKAMKSGSGKVQDMTSDIKNPRVVLTNNVPWASTVIPESEQANATAVVVVKMRNQMNQILKKRQKTLTET
Ga0335022_0000575_14957_15358F009267N/AMKKNKDNDLEKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGVVNDRATFINAVDSWIEKNMTHHHETSDMSEEMGKAFDLYNSASPASQPGESSGSGN
Ga0335022_0000575_16625_16861F046247N/AMIISPNEQGWAFDESTSWKLVYDGSTIIFFDETEKAISTQSTLFVGTKAECDAEIARLGLVDVTAQENDNGLDIHSDA
Ga0335022_0000575_19517_20086F008495GGAMFECLPEYHGLFAMVDYCRPIYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVIAAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF
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