NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0001936

Scaffold Ga0335025_0001936


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0001936 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16164
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017816Metagenome238Y
F049573Metagenome146Y
F078203Metagenome116Y
F083632Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0001936_12735_12980F049573N/AMVVALPEGKKLISTADAAKILGVSMGRVRQLALKGSGNGGLDGYHAAPTALVFDEAAVKKMAKAKPNTGKTGRPKGGFKAN
Ga0335025_0001936_14110_14301F078203GAGGMEARVPYSEAEADEAWLWVNRHGPSNSWTASNGKAARMIGRLLEERERLLVMLAARENIARPQ
Ga0335025_0001936_422_766F083632GGAGGMSLEDLDAYVWSKLSARRHMAGKALVSRLANRVVRKWPHVAMSQTRPEQYAVVTDEIARSIERSERQNYQMGIILTLILGVLIQEIVKAVLRWWLESASNRIQLLGWQTEMRRR
Ga0335025_0001936_5635_5781F017816GAGGMAPWLIALTGIIYVYVAGDLMYHGRYALATAYLGYAFANIGLYYAAKT
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