NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0044543

Scaffold Ga0335025_0044543


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0044543 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2930
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066572Metagenome126N
F083629Metagenome112N
F086810Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0044543_1203_1544F086810GGCGGMNYPTTRNKAKILRAVMYLEHEGFTVGQTKNGFVAVDDDGIVIQATPFRTSAQIFHPKLKIYREEYALYIQETYWFTEKLSLLTEWAKDPNAKEPSRVLSISRRPVPSRQRTA
Ga0335025_0044543_1639_2184F083629N/AMRHTNLPNHFYVQVDNQYLGANMPAGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTESFDPDFDDSSQPWGAMGNNIEAVQFKALEGLTVNAFRAEVSGIHTGIVIDWADGYSQYPAEHKPLSLIIADEGYFLLLPNNHFTVKDKHFVDTKKYVDQMKFYKRGDLVYWET
Ga0335025_0044543_772_1206F066572N/AMDNRKLMDELWPKWRLEPVLSSILNEKWGQLHQDKLQSCIRQHRLVRDSKPDISAIHKAYCALIPQNLVGEREVEQTRNDLQRCTPISAEEFAAWDVWAEAMLKNVTNEELEQVREFIGHVPESRRILAVAIEHVRLPSSRRYV
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