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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0000061 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 94529 |
| Total Scaffold Genes | 139 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 105 (75.54%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004092 | Metagenome / Metatranscriptome | 453 | Y |
| F004475 | Metagenome / Metatranscriptome | 436 | Y |
| F018929 | Metagenome / Metatranscriptome | 232 | Y |
| F029106 | Metagenome | 189 | Y |
| F038549 | Metagenome / Metatranscriptome | 165 | N |
| F061860 | Metagenome / Metatranscriptome | 131 | Y |
| F067413 | Metagenome / Metatranscriptome | 125 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0000061_19720_20085 | F067413 | GGA | VATNNKDFVVKQGIKVATGVTFPDNSVQTTAFTGSALTVGSTFPATPSNGQLFLYTVTERIYYYLNSEWNPIATYFDAQSEYNGNGMTYPTLFARLNGGAPNTTFTNALPSADGGSPSEQ |
| Ga0335027_0000061_33808_34386 | F038549 | AGG | MTLNINAQTGFPPTFLNAYINSELKEFGLIPDGPNPFQPFFPAQSPINIEDIYNDSVYIKNNPDAIVVMFDRLIRFRPNAFYRNKREQLVYFIYAPNLSKLFDATRVIIECLDREDAAAQDLNLWIATNDVEDDNGVAITPNVMFHNVKVYQADEARDIAELASARTLFLNKLVIEYDYHTTDSLGISQRYT |
| Ga0335027_0000061_60318_60500 | F004092 | N/A | MAKEFTVYPGKFPCKKCGAEVTSLRYWGESGDATWMCENKHVSKVNLIPPKKKKKDFANE |
| Ga0335027_0000061_63770_63904 | F029106 | AGGA | MNKLQKVVVAVGIAGAVGLTYVITALKGMPEAFDWEDDEEENYE |
| Ga0335027_0000061_88401_88628 | F004475 | N/A | MKMSNWTEELSDEHKEQLWEFIVETVKEIREQIAQDIEGTSDLWKAKGLNKSRRTTKAFQISAAIARGQNEINVN |
| Ga0335027_0000061_90010_90156 | F018929 | AGG | MSNEEIAALLDKESYRIWDTTKVIKNQDYHDGLVKGLKMAAKFVRNQI |
| Ga0335027_0000061_92818_93096 | F061860 | GAGG | METTQLEPRLQKLVDLGESGTDILHGELKNMMYECEKILVPLLENSNELGSDEDYSDTVERLYNEGYMDALTAVYQLTYQLAFAINDRSKNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |