NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000259

Scaffold Ga0335027_0000259


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46687
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (60.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F041188Metagenome / Metatranscriptome160N
F097334Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000259_11415_11768F041188AGGAGMNLTIEELSTKTVMALKAYAKKNKIELFDATTKLEILEILASWIPPVNKEERVEEANKAEKLTNKVALHSQRNLHMDSLGALKVGYNIVSKEASKKWLTHRLVRIAPPEEVAAYYGK
Ga0335027_0000259_40426_41025F097334AGGMPDVLLDNDDITVLGPPETIELLTDIGATGTRGSQIFVGVGDPNVIEIGQEPRLNDLYINTSPGADYGYLYQYVSQPGAETWIEILELNPTIYSKNFLTTYSGGEASITIPISDIVTLTATPLVAENFSVQYNIVNDNPVASSMSIPALVGDGEDLVINFKAVEHRTDVDSGPYGDWAVLEGQVTTHLHITIIGVDEES
Ga0335027_0000259_9977_10390F004405N/AMKADLYYPIITQTQYGQATREWFYDRTIICNATSIGGAGTEQIKPEAFLQHENKLIARTKTDPRTSSTQTDNAITNILVTNIRNANDEIIYKETAGPRSGRGTIYEVATVDPFSGPFGSVEYFKILLRRTENQTITD
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