Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0001462 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20487 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (39.47%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010835 | Metagenome / Metatranscriptome | 298 | N |
F011216 | Metagenome / Metatranscriptome | 293 | Y |
F013412 | Metagenome / Metatranscriptome | 271 | N |
F017997 | Metagenome / Metatranscriptome | 237 | Y |
F023575 | Metagenome / Metatranscriptome | 209 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0001462_12272_12601 | F013412 | GGAGG | MRHLWSRGFGRLHSDAEVITTDDGKRFLLAIVEFEKRTLANGKPYAQRVTFRSFDPEDMDCVRMLTEGAHIMFDGDCDALAEKSATGWWYANPRITGRIHEIIPPHDES |
Ga0335027_0001462_14899_15111 | F011216 | AGGAGG | VNHLVNANKKVSKTPRTDRQPVVTVAFQHFVKAGFARQLERQLAGANKRIKELEAKADELNDLKKWLEGR |
Ga0335027_0001462_2814_3296 | F010835 | GGAG | MNGVALRTERALVDWLSAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNVGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMRIFAAANS |
Ga0335027_0001462_3309_3776 | F023575 | N/A | MALSKGLALVYGAKGTIQLYTVGVSNALTALTSGTITTIESYDATHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSAADFTQAKLAAGLPKVNGYAAIAGSDGVAVGGVSIDGDYVYSGGGSVKFTSSGKAMVTITVTKYPSLAGTAAVFTL |
Ga0335027_0001462_772_915 | F017997 | AGAAG | VNVIEQIITALLKWLTGLAKTPPTAEDAKPDKELKQKLLDRIDRAGK |
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