NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0002562

Scaffold Ga0335027_0002562


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0002562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15883
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002794Metagenome / Metatranscriptome529Y
F085392Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0002562_11107_11382F002794N/AMERKMSEGTAWNQGELTEETRKMVLESSASASHTMAIFNLMDDIMAISKNPHASIIRRLRAMKNQLSLNEPMPLHDVTTLDLAIKALEAHS
Ga0335027_0002562_12098_12532F001872N/AMNEWIKQAIAASNGAVWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKTEKHPKASRKDALVFIDKLVTNANELGLQCILDYVGPNGRAWRCDRYAWKVYDKPTLHGVPGDWFHIEISPQAADSVIWVKAAFLKVFGEIPPKA
Ga0335027_0002562_3577_3753F085392AGGMSYVIASSKLGKIGELYEPRAGINVAALLAGGFIIEAEVSTTEEEKPAKTKSKKASKE
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