NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335027_0007113

Scaffold Ga0335027_0007113


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0007113 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9796
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0007113_1553_2167F007029AGGAGMGFLDNYEDVNARIKRFRAEFVTGRLVAYIESFDIEKGTILVRAEAYREYEDTVPSAVDYAFGNVATYPQNMRKWMVEDTITSAYGRCIGLLTPSLEHSSRPTVQDMEKVETLPASADPWSTKASIEDMATMASAVLEIGKELGGELVAAAPRCPHGTMIWAEGTAKATGKPWAAYKCTEKNRANQCNPYWHVLGSDGKWKPQV
Ga0335027_0007113_726_881F030767GAGGMAYKSKCRLCGKITEHIERVVTDNLPPYVKSLQCVKCGVMGIVMMEDVKDA
Ga0335027_0007113_871_1377F029049N/AVSSLVKVILDRAQEITAHRVGLERGVAFNSDPKDASNYGQTYTNYHELIWQHAEGCGAEMAVANYFGNYGFVPKTDNAHEEADVGANIEVKWTKHANGHLILQNRGEGRPNDVAILVTGWSPVYVLLGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.