NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0015474

Scaffold Ga0335027_0015474


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0015474 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6556
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F040534Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0015474_1621_1854F040534AGGAGMNTDKSGEGRILSLSTLGEPMSEEEFEDKMNTYELEDRYAEYIESQHPVGNNHVLIRLMERGDYYEDFKEYMMSGGK
Ga0335027_0015474_402_752F012211AGGAGMPTDEEQFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMKRVELKVRRRAELRVFDVVKTPWVDDIEELQHYRNLRIERVQKALDERKIMEAKMDGPFQQMFDE
Ga0335027_0015474_812_1258F009140N/AMQGIGVFPSAKNYKTHHTEVFGDNQMRLNLTHRTLLKRLSNGPRTMLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVFRRGCYDFLQLPSRFGDNFVPRKTPT
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