NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0021656

Scaffold Ga0335027_0021656


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0021656 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5446
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003961Metagenome / Metatranscriptome459Y
F006842Metagenome363Y
F017469Metagenome / Metatranscriptome240Y
F018703Metagenome233Y
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0021656_1032_1166F017469GGAGGMKDICQFCGWEITKPEWYNEYQGSYACDNCLMDSATERERESAV
Ga0335027_0021656_1309_1446F006842GGAGMSYTPAICGDHLVPISECNCFSYMREIASAAERLIQLTKEREEMK
Ga0335027_0021656_1939_2079F072283N/AMQDLIDLIKPILPNALVIDTDEGILIETGLELGLGGLLQPIEGENK
Ga0335027_0021656_35_268F018703N/AMAVMRKREKQRIEAAKQKAVNYRNYRRVRDRALAKLSREYPEAYRAFYEEELKADENMGKKWLDIAGNTKPRNFRRG
Ga0335027_0021656_5132_5446F003961N/AVELSTGTSTGGLMAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKIDRTRLGLKDKQFASGDAHDLSFADFRQRFLHNSTFPHQQNLV
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