NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0027562

Scaffold Ga0335027_0027562


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0027562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4770
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F024719Metagenome / Metatranscriptome204Y
F026822Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0027562_2325_2591F006618AGGAGMSKIKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDTYWRVPNTTPAWVVEWDSEAHQGMSFTHYLDDLTWENN
Ga0335027_0027562_3162_3338F026822GAGMSEPRYLMGDEYALTGTELDIVKCKECASEYDYAEYHSYTCSDCEDLMIKRERERVNG
Ga0335027_0027562_3331_3606F024719GGAGMGEVIELPNRGKIVVILYEVSDTQGIAIWGGENPVEALKWYRRSPTGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMERWGNGKS
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