Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0030338 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4518 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003067 | Metagenome / Metatranscriptome | 509 | Y |
F007027 | Metagenome | 359 | Y |
F046904 | Metagenome | 150 | N |
F060716 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0030338_2580_2741 | F007027 | AGGCGG | MSESIRFECRSCKKITEQIERIVTDNLPANVKVLQCKVCSKMSVCLLVNYAGI |
Ga0335027_0030338_3905_4066 | F046904 | AGG | MNSLDLIVVGMVCLFIGLFIYAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR |
Ga0335027_0030338_4173_4388 | F003067 | AGG | VSQAQAYIAVALGIATLSGFMAGLVRHLVKYYLSELKPDGNGGHNLVGRVERIEIRVDKIYELLLEERLAK |
Ga0335027_0030338_4389_4517 | F060716 | N/A | GALYLSGISDPKVLANAFLAGLIGPVLKAIAPNEKQLGIGAK |
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