NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0056810

Scaffold Ga0335027_0056810


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0056810 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3135
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033780Metagenome176Y
F060870Metagenome132Y
F103171Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0056810_1274_1561F033780AGGAMTVSKCSWSLVAVHWIDAFDSSNGWISTKDYKPKTQHVVSVGWLCPDLLEGYVSVTCSWCPMEEPEMDTIGMVTHIPVGMVQKVVVLDEPDWVVE
Ga0335027_0056810_180_464F060870GAGVDANAALIVAAAVTAVGGIIVAIIQQFKKENHTDHQVVVGLLHVLRKSQMRVEDKVDRVDERLTSHLESHANKGILDNESAVNKDGATRNRKIS
Ga0335027_0056810_412_591F103171GGAMSQQLTKMELREIVRFLKKVYPGVEDQDDLWNLINKVEQQLKGDNETSHRRSRDTPKGA
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