NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0059408

Scaffold Ga0335027_0059408


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0059408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3053
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002794Metagenome / Metatranscriptome529Y
F048950Metagenome147Y
F091931Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0059408_1082_1228F048950GAGGMTLEELINAIERLQAVYDLMVEEDQREAKQYVRWAIKHLADKTYMASL
Ga0335027_0059408_2189_2467F002794N/AMECNKMSEGCAWNQGELSEETRRMVLEQMMTTKHDMAIFNLINEIADISTNPHASIIQRLKGMKNSLSLEEPMPLHDVTTLDLAIKALQAHS
Ga0335027_0059408_2449_2958F091931GGAGMNYFAEKIIGLVLCTVFGFTVAVGAPDASGSPSGTIALAPISVQPYLIEPTTTTSSTIYIDPYSSACEQFSALAVNLGWPANERTVLESVMFRESRCIPNIINKKDPNGGSRGLMQINGFWTPWLTDAGIITSAENLLQADVNLRAALAIYNYGVERHGYGWGPWSATK
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