NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0087655

Scaffold Ga0335027_0087655


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0087655 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2403
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005451Metagenome400Y
F037725Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0087655_119_433F037725AGGAGMFDDLPLFRLSDPVTSREGAKAVKPRRTSQAMLLLAEYQHKPLTDEEAGIASGLALKAKCCYWKRCSELRAQGFITDTNTTRMSTAGSAMMVCEITAAGREALQ
Ga0335027_0087655_557_982F005451N/AVTAKLVDLCNRRWKTTNLGTYVNRQMRGSNNLSVHATGFAADIKYKDEKQAREMWDWFLGKSELGEHSKILGICEIHWYSFGDYGAGYRCSRGEGKAGVKIFTATDNAGPGDGWLHIEVADQTPEAFEAAWRSLPKPQKDA
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