NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0234698

Scaffold Ga0335027_0234698


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0234698 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F016523Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0234698_1029_1190F016523AGGAGMYQYFIISPRLGNPGDQFIPEDGVNIDALLDGGLISTDTAKKSSKVKSEPKEQ
Ga0335027_0234698_25_657F001326N/AMAIYSVTFKYLLDDYAVLQLLTPTEIAVGESITVAGVDATFNGTYTVRALPQYLYVGTDTEGDLLYDINIPIANQVLFAKTADNVQRIASPGTVTYTQTCTWVSAANLVTYLGVQITNPSDDYTLITQAVSAGNQFCYRRRQEAGYIDNLVTSPGGDQTLGTLMYCAALWRSRGSLENAFASFDGMGTAPQQSLTPIVKQLLGIDRPACA
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