NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0586254

Scaffold Ga0335027_0586254


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0586254 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036961Metagenome / Metatranscriptome169Y
F085210Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0586254_160_681F085210AGGAMSFLIPNGDALVDYIKDFTGSSNTDEIKQCIFLAELSMRNLELPALRSDPYAPENIGVADSQGQIPIPADMNKPIVFFKQGNPGGQTSSETGPWIVYDRIGDRDIITQGMIAQLYLQPVNVPAVIRGKFSEVYDSYKFLPYVGEGDLINLYYYKSWPLLFTPVDDVVISATGTV
Ga0335027_0586254_2_163F036961N/AIKHDRTLKAQFYRVVEREYPQYVCYPGGRLPIPVDVPYPAKVGEQKFFKGHAL
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