NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000004

Scaffold Ga0335029_0000004


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)359425
Total Scaffold Genes468 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)284 (60.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002869Metagenome / Metatranscriptome524Y
F014734Metagenome / Metatranscriptome260Y
F085337Metagenome / Metatranscriptome111Y
F087103Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000004_249526_249846F014734AGGMADESAKGMFIEKLLFALLPLIIAGVGYLLSAVGTLAHQVTVLESKMSLVVTSDNKQASNTGAELAREKLRQDLTEAVQRNRDSIQANKEQISVHEERIKRLEKGK
Ga0335029_0000004_299131_299283F087103N/AMKLLHDDYNLVYVWVDDMNEDIELSPHFDYEDDAFQWFERMKKEVTKNER
Ga0335029_0000004_310248_310409F085337N/AMWALIIALMMDTTPAETKFTRLAEVKTYQECRDLAKVLRDRGLKAHLFCVEQQ
Ga0335029_0000004_358392_358760F002869AGGAMTNEITTEMLDRKIAWCEQKLADAKIAATHRMQDFYFEKTRNSVDDDWPESFNGVDLAQVLNVERVSYRIYYSKDNLTLRLFVFRAHCTPAEMETMASMGFVFANDGDTENIPDKPVEEIEE
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