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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000275 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41946 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (78.72%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000843 | Metagenome / Metatranscriptome | 864 | Y |
| F002130 | Metagenome / Metatranscriptome | 591 | Y |
| F002370 | Metagenome / Metatranscriptome | 566 | Y |
| F033775 | Metagenome / Metatranscriptome | 176 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000275_16486_17094 | F002130 | N/A | MSEKPESIIDKVLTYVDSPFKLFAILVMGVVAFAGYFLWQNQTFMFDAYKESKKLPEINDARADDASSMLLKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKTIEDIDVGLFSQNTANNADVVKLMTNEIPCGDYRYAQSEVGLWYLEKGVTFTCRVSVPPDSHRFVGQVTVGWAEPPTDIQQVKFMLEIASAMLTKRGN |
| Ga0335029_0000275_21932_22339 | F000843 | N/A | MPLHHVHPSTLPTIWPIAFPLLKKAIDLDPEAYNPQFIEYSIRTGRVHLLVWEEPEVGITGACTIEIIDDPLERIAHVHLMGGKGVVREHVFDEAKEFMRRCGATKAQCWAKGTLVDMYKKMGLENTHQVMRVKL |
| Ga0335029_0000275_2310_2582 | F033775 | AGGAG | MQTDVKAVSLAASGAVTDSRARLRSLVIEPGASAGSVIMKDGGSGGTTVMTLNTTAGGETFNILIPAEGVLFATSIYATLSNTKVTAFYA |
| Ga0335029_0000275_5203_5367 | F002370 | AGGAG | MDAKTPVRKHEANMHPGAKPTKLRAGGKTNSDMLKMGRGLAKIANQKSPGRKGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |