NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000466

Scaffold Ga0335029_0000466


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000466 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32593
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020651Metagenome / Metatranscriptome222Y
F025278Metagenome / Metatranscriptome202N
F025648Metagenome / Metatranscriptome200N
F054663Metagenome139N
F086624Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000466_16551_16958F025278N/AMTIFLTIVFLVHLISWILYQKFQFKERDLYATDSHNAYEANKKWHIWKGINHLSVYVLVWSLYGFLSMVFFATAFWFGFDILCNIIVLKRPAFYVGQTAQTDLFIRKVADLIKIKPEYASALIKVLILLILIILK
Ga0335029_0000466_21246_21470F086624N/AMSEVKKESIGAWKNQTKDGKEVIKFTINGQRYNMWLNSYKDKNSQPDYKIYEDNYVAPTGQVQETKTLTDDDLF
Ga0335029_0000466_22535_23278F025648N/AMEIQKILTQLPQAANEWKTLPIGLIERDDLPIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDVVELEVIEDYIRTTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKAKANQVRKNLPPPPEEPVKQLTDEEIVDFTKNEWLNGKREDFNRVFNADKVFMILLKQGKLKFTQEQILETIKVVREDNLYRLNRMHPLEAKEFSKQIKKEDFIESQCKKLALVKYFENISS
Ga0335029_0000466_24766_24996F054663GGAMEIKQEHKEWLIANISNYHSAKNGYIRNLDLPELKMYEHIYRTYLDPNFLLSVWCGACKFDMIMRLYNWFENNNNG
Ga0335029_0000466_25458_26132F020651AGGMNIAVILLTLNRNDLTKRVIDQNFRNSGYDADCFLVDNGSDQVPYELYNWTNCNVGSKRGISAGVNAGLKMTKAYDGVCILANDILLPTNWLSNWVKFAKRVSKTGIIGIHCVEDLPPLVDGIHKTHTPFGNNFLSRELIDTIGGYNIEYDPYGMQDRDYAERATIAGFTNYYLPDLRSEHIGHDVGNGTEYRAMKDASLQRAQAVWEKYQPIYHIEKKLRCEF
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