NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0000532

Scaffold Ga0335029_0000532


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000532 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30204
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (40.00%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F014837Metagenome / Metatranscriptome259Y
F015354Metagenome / Metatranscriptome255Y
F016141Metagenome / Metatranscriptome249Y
F023295Metagenome / Metatranscriptome210Y
F024095Metagenome / Metatranscriptome207Y
F035672Metagenome / Metatranscriptome171Y
F043831Metagenome / Metatranscriptome155Y
F048257Metagenome148N
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000532_12404_12820F048257N/AMTAFPSSVAARKLIKGENYTDSAYWVLRRTLLIRSGLSLAGEKKNIWKKALYGSLAVQAFVTAWTATHMDEPVASLPSGEVAIQKDAVGILGTYLLRSAIVGTGLWLSGERKNLTRNTLISTALIQASVLLWAKDQEV
Ga0335029_0000532_12817_13677F063343N/AMNYLILLGILGLFIFGNKVRPNWVSGIKSTLIKLMIPGADRRLFSGFTQATFSWIRNPASWVRVFNWTGVAAGINGLGGVGGGTLISRRHVLLANHVPYPDRPFDIFFSNKDSRTFTYKVTNIQQVGSTDIAIGTLDKDADASLNVYKVLPDNWAQYIAKKTENFNSLGVIDIRYAFVLPALYTGQDKKVSTGDVVSISLGIAAVNIPAFEPARAFGDGVRGGDSGNPIFAMLGDELVLLGAWYRGSTAAGEVGGFPWLISQKPAIEKIIGQKLLVADMSGLTRIA
Ga0335029_0000532_13674_13907F023295N/AVYSKAKLLLISRRSLVLLSMLQSMGCQTRVILVPDGQPVQLAEPVRAKVYAFDATGKPVPSSNKVVLPAGWYVLPHK
Ga0335029_0000532_13968_14159F015354GGAGMNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAVVTLIGLVLSMIKNKKPAVPATPPAA
Ga0335029_0000532_14156_14344F035672GGAMHNLHDSLRDLGIGVGGPAGGLLVANIVPDPLVAHISVTLGALAALSVIIKNVLDIWSNRNK
Ga0335029_0000532_18342_18827F014837AGGMIQRTINPKPRFLTLTAAQPFVGAPLGTLHRVAFFRFPQDSVMHYVSINSTFSIDGAFSQVTGAVAYGQNETTLTSVIGAGLENSTDGIIWRDELLNPAAGTLSDSKSNQIMFNEFFVHAGTIVGIYVNGLGGNARINATIAFNPIAEWVNFREPTSGARV
Ga0335029_0000532_18880_19281F024095N/AMDNTNSLPFVYLANVAFGAGTLGASLSTTLIMQADSRFELMGIMGTGGETAATEQALFYPNSFTVSIRDQTTGRDLMSAPVPQRILCGNAFQQFLEKRGIVFEPQSNLLFTFTNLTNVANNITLALHGYKMIL
Ga0335029_0000532_19344_20096F016141AGGAMSPEILDSLQKRFGSADFSRYQVVRGQKYDFCRLQNGATTASSVSFFSNPIGAADPAAPTVFKTLEQTNLVKNASFGQEYFALTQIRTYANFVAQARQGTAVGTNFVYRGYSALTNSAMEQLQTLMSTGVLEIKFAQKLYYQIARPFVQCPPGFGVDVQSLASSRTGNAAETQAADTNWLVRPDYRGSSVYNIDPIQIIEPEIQIQAALTFPGGNAPSFLDSALTTGNTAFTPAIELGLIFDGYVIRPSQ
Ga0335029_0000532_20130_20864F014726N/AMGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYVTYPTAGTSELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLLSNNDDGFTLANQVAGGAVGIDTQALASDFLNGFVQAGVLEFSVGARPFATIPKPFQYAPPPGNPLDYNNSYVNQIGAVPTAGTPTVVGLPWVTQTKRRDNVYFVDPNILIEAEQQFNVKLSYPSGFVPVIANSVVNNSTNPLKIGVIFDGLLLRPVQ
Ga0335029_0000532_3762_3989F043831AGGAMTSTQLAAIAYRLGAIDIIAAQIYQLTLDLDELQEGSLSVKLELALKAFDERASEHRKTLNQFTDEIPIDPTPSR
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