NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0003593

Scaffold Ga0335029_0003593


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0003593 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12336
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006262Metagenome / Metatranscriptome377Y
F010611Metagenome / Metatranscriptome301N
F044973Metagenome153N
F088293Metagenome109Y
F103227Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0003593_11139_11339F103227GGAGGMKDSFAFIYVHKTNGAIRVESLDTARRVDNRPEWKHVSTVNPHVCLENILTASTRQRTQYIKDLLK
Ga0335029_0003593_11336_11494F088293N/ALDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEQENDAMRADLLLWRNTEAK
Ga0335029_0003593_2493_2915F006262GGAVKIRPEVFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVYYLEQDGNLTPTDAQIYTKMVTVVLVAATSFGGDFSNFRREASYRGMS
Ga0335029_0003593_4784_5413F010611AGGAMTQKEYGDRIGISQPRVAQLISQGMPMDSPESADLWRSQHVRSRAKSIPKQKNVPDPTAIEQEGPYRPIEAETPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKT
Ga0335029_0003593_5718_6089F044973N/AMKIPYDLDRVKLLHEAPNLVALAIKRGWMSYPRSVKLSAIGTPILVLEEEEDYEITATAQDADVCRKAYDLRERNLSLDDVAKACGVARGSVAYIIAKGHEMYLRQQRIEHSTIDTSVKPANM
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