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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0006096 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9473 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016262 | Metagenome / Metatranscriptome | 248 | Y |
| F019993 | Metagenome / Metatranscriptome | 226 | Y |
| F025232 | Metagenome / Metatranscriptome | 202 | Y |
| F028461 | Metagenome | 191 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0006096_2153_2995 | F028461 | N/A | MRKKTNAATYYKNPSLQESIIRYYKEKQLNFVVKHSNYNTQIIGAEATLKFIQTEHPIRVFVAYNKIVKDLKESPKTVEILQGEWSTDNFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLITQDTFNYLMAMPKTERLPAIGMIAKKSVWITYTAGKADSWELKEGFYANIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTIPKKKLDEITRIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGQEKPYQMYDKNLARNFTKVLQQLENA |
| Ga0335029_0006096_4789_5016 | F025232 | N/A | MENVNEKILEDYRLVVTRLDLMKSEVDEVNRANFKLRKAFNELLDIYQEELARRESTEDSQEVAYYWCDKAGILD |
| Ga0335029_0006096_6075_6539 | F019993 | N/A | MKPEVKLLLVAGVGYLGFKAYQIYTAIKKLNYAPTGINFALNKSRGAIGGTLFVDIINPTAANIRVDSFTGTVKTSDGTMIGDYKGQGLVLRPGVTNVRISWGSRSSLALVNLAIGISKGKYPVLNFNTVYNISGFPIPTSFKMDTKAYKPTFV |
| Ga0335029_0006096_8189_8602 | F016262 | N/A | MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNVFAKEAGKGMIAQAAGTLIKSNFPALGITGDGYSDNTMLSGLDTGVDNPMISAVSSSFLADETSGDAGEMDY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |