NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0018496

Scaffold Ga0335029_0018496


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0018496 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5325
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F016499Metagenome / Metatranscriptome246Y
F053035Metagenome / Metatranscriptome141Y
F083731Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0018496_1289_1684F016499AGGTGGVAAKKAPANKKAFTQEMAQTVLDLGKQGASQKAMFAAINISKNTAARWKKEDEHFAETLDLATVYAQAFWENMMLANVENKGFNSRVAEIALRGQFQEDYRDTRDTKVDLKAEVKIDFNKEIAELISALKS
Ga0335029_0018496_2900_3043F012096AGGAMSTWLIAAMGLVYFIVACDQFLKGGVGTGIMFIGYALGNVGLVMVAK
Ga0335029_0018496_469_726F053035AGGAGMNPFELRFSIFNTAKDLLVKQHEANLAAWEVLNKTTKEAEELAPKFPTTEEIIDKAIEINTFISGNTTKELANIAKRMSGVSVIF
Ga0335029_0018496_81_305F083731AGGMNLKQLLKHAGISNNTIKEVEKKTAKTNAQMEQEHQEKALAMTKMILNDALKYRKEHGDNTPPSAPKKTIIIPD
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