NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0029401

Scaffold Ga0335029_0029401


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0029401 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4141
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004924Metagenome / Metatranscriptome418Y
F004978Metagenome / Metatranscriptome416Y
F014848Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0029401_1128_1331F004924N/ALGRACYNTYIATKEHTMRDVILAKLAEVEDLLQAATLDGESLTEMACFSELEGALNTLVQAVDYYVD
Ga0335029_0029401_2591_2971F014848AGGAGMTRYYDTLAEFERDGYDIIVDKSYEDLNPRDCFDDSVCDIDEIIKDIDRGHLEWFMLRVRVLVEGLELGSAYLGGCLYEDPREILTDGTAEDFIAEAMVEAKSQVYRLSRKFTELSYAVDREGVTV
Ga0335029_0029401_267_521F004978AGGAGMITADTLEALTTYSPQFLTRAAQNAGYKGPEFSSCKFIGITNGGQFCYTAVFHVKGGTDSTKIFLSYDHAEDKVIADYHLTELA
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