NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0058530

Scaffold Ga0335029_0058530


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0058530 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004306Metagenome / Metatranscriptome444Y
F048302Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0058530_1470_1739F004306N/AMSLAQRELGNIFRKDNETNMSNKHIEIVRYDNAKIHIKEWLGEKLLSPVTYQPAIVKMIGARLLVVNPDNGEEYYDCRYEDCTIKRING
Ga0335029_0058530_591_1130F048302N/AMVLITILALAVLGFVGKLIYDVQQNKKKPTKNEDGFDKDALQKLAGIKPIETTASELPTNLTTKKLNEQIVEALLKAAENSEFPKQDETINVRTTKIGTIDTNFGDNDPLATIPMSRVSNEGKKKMAEIAKEDIKVTTKAKAAKLASIFPEAIEYTDEYSKPDYSNVKPKRKYTKKPKA
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