NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0064890

Scaffold Ga0335029_0064890


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0064890 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2644
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F019968Metagenome / Metatranscriptome226Y
F022646Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0064890_1086_1361F006893AGGMENLTIKSISETTKKVLCNHKLYKDINFFEVPHNKVCLAVIRSITELSYNEIGKAYNKSWFTIYASVKDTQKNGLKAFTNRIIDLVKAEVK
Ga0335029_0064890_1300_1686F022646N/AVQIAKANIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDKFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKLASISPCIKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
Ga0335029_0064890_2287_2454F019968N/AMRNTGVICSMSYYEMKLMTAVLSRILLDNEVKGEHTKKRITTLISKLNNMMTKQC
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