Scaffold Ga0335030

Basic Information
Taxon OID	3300034103 Open in IMG/M
Scaffold ID	Ga0335030_0000585 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034103 Open in IMG/M

Scaffold ID

Ga0335030_0000585 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33765
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (77.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

33765

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (77.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y
F053996	Metagenome	140	Y
F057212	Metagenome	136	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y
F095177	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000585_12310_12531	F095177	AGGTGG	MGFVPYGMEYATLDDKHKIRKMLEYLGITHPAQQMEFMSALLGKPFDTTKMSRQDFITLRSKIKNIQQTKDKA
Ga0335030_0000585_12531_12653	F074591	AGG	MTNWNWTPRARFIGELLTALAVIGAGWVLFVGTWFALGGN
Ga0335030_0000585_13530_13871	F086842	GAGG	MNKAEIGKVLAVAMAIDARLSAADEAGFRAKVEGWSLALSATMEFEFARDAVGKHYATSTASVMPAHLNAMWSSHRNRQNEIDNVRAIGSSPKSQGMPEAIRQQLKGFGLIND
Ga0335030_0000585_15447_15713	F053996	N/A	MADHKLFANHDAVTPVDWAKVWEVIDNIDEPEFDEHQLVIVAVLEFLCGSEMVEVSLDEIANLPQIERQAVAEALRLKWSKVEFQENL
Ga0335030_0000585_15749_15907	F048854	AGGAG	MADEQKENKDNMIALRLNSEQMLAVRQWAHQHNANVSQVIRSAIELMTGAKQ
Ga0335030_0000585_19302_19580	F050233	N/A	MGLIELGQYAGALTAIAVLFGMFIKWAIVKPIKAYIDTATYALHPDANGGKSLADVARTVNRIESNVKDLDYRLNSIEELVTKPTRAKKSAS
Ga0335030_0000585_6951_7505	F057212	AGAAGG	VTTIVTTTGNNFCTLTADQGITSDLIHPDMPKIIQQDTWLIGVAGSARLCDQLQYAIEYPKPPVEVVKSGDWLKWIVTKVVPLIDDTIKDKEMDAEALLVTHGKSFLIGEDLSVLTAAPYWAIGSGADLAIGSLADKQYLPDWNKNHDLSAKRAIEAASMFDPNTRGTVDQYRSYGNGKVMRGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335030_0000585

Overview

Ecosystem & Geography

Associated Families

Sequences