NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0007899

Scaffold Ga0335030_0007899


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0007899 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8246
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F004005Metagenome457Y
F007360Metagenome / Metatranscriptome352N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0007899_37_486F007360N/AMRNTPTPEPQRYADAQLMALLDPSSKRDTIMITPGSPMPSRIPDGLTVAETSRGIVITSDPAKVRIIDQGSEKDVGMALFGYAYDQGKGFDNVAVAMDRNRTPVAELAIKPGQERQAMRAASLLAPDTGSTNMMSRGDVVSTRLKGLLD
Ga0335030_0007899_6190_6495F001182N/AMCVHADFITGEKMKPTPNCPRDLYEFKAIVEDVDLVCFLEYSPEEKGSTDSHGAPYEPDFEESMTLNNAYIAGTDVDIAHMLLQSLVDHIEISALEKHNDR
Ga0335030_0007899_7194_7538F004005N/ALTLILIQSQSVSPTQIQLGNEANERNEMTNATQTTRNESMYGFNDIEGYIDQVKESITYQFHGGHMVVAGLMSDAQEQMGYGNTEGARKTLNIAKTIMFQIMDGDLIGTRTTRA
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