NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0011271

Scaffold Ga0335030_0011271


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0011271 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6848
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015080Metagenome / Metatranscriptome257Y
F048940Metagenome / Metatranscriptome147Y
F054636Metagenome / Metatranscriptome139Y
F058096Metagenome / Metatranscriptome135Y
F059435Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0011271_1827_2075F015080N/AMFEQLEFKAHSIPGAIQGSYKFSNDWSISVVSGIPGCGLYGNVMDRTYEVAIFRPNGNMTEDVSGWNTKEQVCAIMWAVSQL
Ga0335030_0011271_2383_2583F048940N/AMMNEVQSQGMTTAQRMEKQFFISFIRLIDEVQGKQKLPSQIQSNRKSAWVKQTQNPKQKKDALARV
Ga0335030_0011271_5199_5357F054636N/AMTIKLEFDDYEKDLLIDTIQHRLDTDKILVINNSLKEELEDLLRKVEEDEYV
Ga0335030_0011271_5344_5514F059435GGAMNTYNISVNGNEILSQVPQNDLQENLKLIRGLVWTSGGNDESIIVSLNKNEDHCNE
Ga0335030_0011271_749_1084F058096N/AMMNAQLSIDECKVMWVVGALERLATLGLIGPDVPLKLSANAVEDYIQIDEHRELLFESDFEIASIVTELINDECDPDIQNPEDTKPLIDLLLEYKNNRTEIVKYALSHQLI
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