NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0069326

Scaffold Ga0335030_0069326


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0069326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2610
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F079999Metagenome115N
F100733Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0069326_1176_1595F100733AGGAMRARNTETRFACSCNGCRNYPTRPAEIWHQDQISSKESGTFYFRKDTMRFFSSRIVDFKAFNRGQEVESLSVIVSSRHGYEGASRYYEIVMLCPYGTIHREGKSFESLRLARKNWESVISDFAPCSCHGCELDREQVSA
Ga0335030_0069326_1835_1996F004793AGGAMTLEQARKIVGNQPNWALKNMVKALKMMPILNTAQDEERLAAALVVLKSRKVK
Ga0335030_0069326_667_804F079999GGAGGMGDIFELSFRWQDGFIQFLIYALVIYLGLVIISKITDKREREGKK
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