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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034104 Open in IMG/M |
| Scaffold ID | Ga0335031_0000505 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30286 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (80.36%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000368 | Metagenome / Metatranscriptome | 1223 | Y |
| F015731 | Metagenome / Metatranscriptome | 252 | Y |
| F020909 | Metagenome | 221 | Y |
| F033806 | Metagenome | 176 | N |
| F077306 | Metagenome | 117 | Y |
| F089589 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335031_0000505_12931_13260 | F015731 | N/A | MGVNMSVEIETGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESRRFDTKRAREILPSQVIEALEVVSTSRRFSIVNEDN |
| Ga0335031_0000505_14454_14825 | F033806 | AGG | MNLDQFKQPRDPLFSIHNHSDGHIALYLEEQDAVKDLVQDVVGAYELDDLDLLRHSADRSVKSENYFEHLDNARDNLGENAPLLCNMSEQEALILAEDLIRAVKFARIGREAQGNYPALKAVE |
| Ga0335031_0000505_15954_16190 | F089589 | AGG | MSNRLWVDDNGSVLCDAHSGTYLRAGFEANNQAIQHKTPLGTWCAYYTNLLGGKDLVCEVCVPWNSPNHPYNQMNAGA |
| Ga0335031_0000505_16616_16780 | F020909 | GGAG | MITKRGKRVRAVAIAVGLIVIWQVASNLWWVGIDAPSAEFLGWCWGSMNECVVL |
| Ga0335031_0000505_22714_22899 | F000368 | GGAG | MEQFKQITLSWFRAAAAAAIALYLAGETDLKTLGMAALAGAAGPVLKWLDSSAVEFGKGS |
| Ga0335031_0000505_24965_26095 | F077306 | GGAG | MSAFDGITSPAIAVQFLKSGTWTSVTTTDVIEIDIRRGRTRQSERDQAGISVVVFNNTSGYYNPDNTSGGNPWVVGGQSILRDGLQMRIVATIGGTSYNLYYGFLEETQVNLDIVSSVTMTFVDGIAYIADAQAPALATAGFAETAATRVGRMLDIVSWPSGGSRSLTGTVGMLATVQNRSCMELIYQAVDSIAGRFYISRSGVATLVPLADKFSRPTQLLFTDTQASNTVGYMQLLTNPGTYFVVNQAVINRGNANKQYTSQYNPSVSAYGIAKTVIDAPVATDSNAQNLALYESRKLAEPLTYVERIDFNVLALATRGALYPDFLATELGDQVSVVRSSQQWNLVVEGMAHRITQNNWLCSYTTSAINPYSITI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |