NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001313

Scaffold Ga0335031_0001313


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001313 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18801
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004477Metagenome / Metatranscriptome436Y
F018701Metagenome / Metatranscriptome233Y
F023846Metagenome / Metatranscriptome208N
F077305Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001313_11190_11441F023846AGGAMTDRAKKITELTSIGTANTSIASGDLFIVEDVSANTTKSATLSTLRKAIVQGPYADDTAATTGGVALGQLYYTAAGVVKVRIA
Ga0335031_0001313_13394_13843F004477AGGMSLMSFFSTPPITSFEQLELEKGKIQLTIMKMAATVLGAIMMAVVAIFLIGMFMPNELIDNNEIFKIIGPAFSTIVGAFVGAFATMMGMKVSELDTNVKTQELGKTDHKALAEAHVINAQAESIETDNEIKMMAAIDKYKDSDEDHGPF
Ga0335031_0001313_3_263F077305N/AQNEVYTIKLISGEEIIARVKQEGGVTELLKPRSIAMTGNGGFGMMPWLVSAPDSNVLISDTTIVGAVKTGQMVATQYIKQITGIQV
Ga0335031_0001313_992_1726F018701AGGAGMSAASDKYEKDVADNINSIPGVTATRPPGATDLSDVKITSYNNKRVDKVWVEVKMSHTDNLSNPRVFYSDGKWQTTYKTPAAAEAVKILNSSAKAKQFIKDISKYSGIPEKVIKIPTSKGGLNESGAVPLHVMKSYFSQSNINRYIANEPGMNLGALVTRHYLEGKREPAYYMQAGDDFYMIGKGNPLGLDTAIPVLSGQGDFKVRVSTRSQFYEVQAEIKITKMPDSKYSVKPGTAKKNPFLR
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