Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0001534 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0001534 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17447
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (66.04%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17447

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (66.04%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F027180	Metagenome / Metatranscriptome	195	Y
F061858	Metagenome	131	Y
F072347	Metagenome	121	Y
F082675	Metagenome / Metatranscriptome	113	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0001534_11370_11519	F027180	GGAG	MAIKLFNKKPKVREVILDSDVIFTKLDKLMGEMASIDIYLEYLELREGM
Ga0335031_0001534_13510_13662	F061858	N/A	MKFVHNKIDGTFVIGISFSNYFSKNLGRKNTSLIFDLGKHSFAFVMRGEY
Ga0335031_0001534_4736_4987	F072347	AGGA	MDNRTKAEILVQFTQDYFNSEEYDEFFDYNDLGIPMSIAITQDMVILTDSGEELLEETWKELCLLFEADPNGEYESIDDLTVN
Ga0335031_0001534_5863_6300	F007525	AGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRLVEVERCGEMHLTLPELVNGELSDEGATIVRYSDDLEAEGINDDIQLLQFIKTISNSGFEIYRMNPWWELFAHNEDMGGIYDTFYEAIDAGIDYITDDSNWEN
Ga0335031_0001534_6310_6537	F082675	AGGAG	MSNQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKQSGKWEYLEEDTEQEAEYYRLEEILAYNLTRLDIPKKVG
Ga0335031_0001534_6667_6849	F093864	GGAG	MYNYNVEFVLEAMVMITSVSFDEPDLSDEFIIEQARQNIISYYKIDPEVLHLQDVIVHEV
Ga0335031_0001534_8913_9401	F008496	AGGAG	VDYPIPASVTPMSEQVAVTPAYDPKATILVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSIPVNEDASDLSVYDFDITIESNESKYEIQEFDADIDSIDERY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0001534

Overview

Ecosystem & Geography

Associated Families

Sequences