NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0002947

Scaffold Ga0335031_0002947


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0002947 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12802
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F010016Metagenome309Y
F066456Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0002947_12069_12278F006587GGAGGMDSKKYEGTGYIIVGFIIGALLTWAIMQSIHVQKKYSMNLKCVQGELYEEIRPNFYIKSHLECFEQRTY
Ga0335031_0002947_1744_1935F010016GGAMKNTARNDVTGDWLQSKPNNEQFEKNFDLIFRKKKEVLPEYELNKSTGEVQKVDNGDTTNTPK
Ga0335031_0002947_9233_10078F066456GGAMGFHINVYNMPRINDYKHAKEIFNSKTVVRGENQSVRRLGDRYEKEKWLRQEIMDGIEVYIAGYYDTDLVRFYPTHKEITLGGYPSRSTQYFLNYIGGVHLHEFDHKRYVPAPFTRSPLVKNNQIECVIGLDRNNYYVNARDWYAITYDNKPMYTEQFEKPVKYSFDASQMRELRKPYQKLLKYADTMLKLNNEGFENDEKLSEQTDAYRDKLLDLFADEEQTYLSFYHLVKQTYRSRWTGSGGYVRYVNIGMIKRYLDKMIKLENPQVLVEVKPTNNLTT
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