NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0003347

Scaffold Ga0335031_0003347


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0003347 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11975
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049633Metagenome / Metatranscriptome146Y
F052593Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0003347_3454_3849F049633GAGMRTQLLTYLTAQLTASIKTSQELPFQEGTNALYLKNLRKVYLDEPYTEQDALYMTLSASHAVNQKTTIVRGFLAVDAKNRNADLDAALTIISGSKDIATITGFYRKEFDYTTSISNDVLLYEFQWRFFNIA
Ga0335031_0003347_3860_4327F052593AGGAMAYIYPAPGVASVELTLTLKVSGDTTGLLVPALQDVTLNNANDVFTWTQLDEESKLQIPTTATNSLDMNLVLDQTAFFGTSTVGEVAKTKGLFGLSKDKTLITFDLYMGDTSSGGAGKTVSGSGYVTGLAPTVSADAPVWVSPVTITVTGNYTIA
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