NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0014572

Scaffold Ga0335031_0014572


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0014572 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5775
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054812Metagenome / Metatranscriptome139Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0014572_1201_1380F054812GAGGMNEQEVNQKFDALVKTKAIKEKKEPAKFPELRYLWGITAIVSVALIVLSATVSTFLEAL
Ga0335031_0014572_4405_4767F103142GAGGMSLDYKGFEWGERISADEDSVDRFLHEGLVPQSPSVGDLHSAAEWLATYGAENSEDAQGWANVVAFLILTAEAKEKRSNLAKAKKKFAEANGIPVSQVRIKKEAEVIRQGLALIPDKIDY
Ga0335031_0014572_5081_5602F102814AGGAMANTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKEAQKFVTQVLSHQRTKKLHEKYRFQFSNYPSKIVVESGSGNHATIRNRNWETVRLIRLNKFGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNQKRVRVMTKTQKARVPRKREIVSARLVA
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