NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0017784

Scaffold Ga0335031_0017784


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0017784 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5211
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011580Metagenome289Y
F014489Metagenome262N
F032957Metagenome178Y
F047564Metagenome149Y
F079815Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0017784_1595_1969F014489AGGAGMELKQQHISILKRLAHGASSLKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLTYPRKYV
Ga0335031_0017784_183_374F032957AGGAGMDDFNPTTRMFSRTLQEAFPKDYVNENIIEGAYYSAPHINDLPVLFGLIAVISMIAYALWRYF
Ga0335031_0017784_1_144F079815AGGAMKTLDKKCLTKRYDGFIQDISAIQNDLVMLSHWIGEQQVKHSEYLKRS
Ga0335031_0017784_3102_3350F047564N/AMKPTPTLIDSEKVIPCPYLSQLKPYTQQETFLEYLTNHYALMAMNPKTIEQSRWRAKELKADFPTLPTLIANRIKELKNEMP
Ga0335031_0017784_4787_4960F011580AGGMTQTQALTKALILALIAPSDEKATQATDLAESIAQGLDFAQVEQCKADALAMTEGAQ
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