NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0044845

Scaffold Ga0335031_0044845


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0044845 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3194
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F005087Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0044845_3_446F000857N/ALEGGIDGVFRHNDKLFNEVKSGTWSQTFKTANIDYKVGAIDGTRYVQYDQKNVESIRQMCKDRREFYKEHGTANPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKRDKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK
Ga0335031_0044845_456_1439F005087AGGAMALFIQSANTLVSRIANWVGAIPSSVGINATAYNTTTKVITCSANPTSVVSVGDFIGFSVMGPYALAVSVTSTTITINDPEGIWDDAVIPTAIIKIPTQSTIEITQSIQMAELKMRTIELPALRSNPYDDVDPAVLITDAKGMSPIPADMCFPILFFQESQPTNQPPGGTNLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVIIKAYYQRVFPFLFSSTADVDYPVVQSNAILASFPEGYFYGTLWAYYDKNKNTEEAQKWLSRFDDSYGLIEDQNYKGKWRGGDQHLTSEFQPRTYRYSFK
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