Basic Information | |
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Taxon OID | 3300034104 Open in IMG/M |
Scaffold ID | Ga0335031_0084625 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2250 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F034165 | Metagenome / Metatranscriptome | 175 | Y |
F056554 | Metagenome / Metatranscriptome | 137 | Y |
F090310 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335031_0084625_1554_1886 | F034165 | GAGG | MPVGTVEITLGKDVTITGVSNARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDDPGVSIGGTFTIGGTQTGNATYICTNIGKSQPLDGIETFTVSGSRTVSA |
Ga0335031_0084625_155_622 | F090310 | GAG | MSSTLRTLADSLADGLQSVTWAIASTVVERRNWANLDLEAMSVPHVLIVPGNAEVTRISRQMMQVDYTVSVFVGRHVQSDSDVDGMLDLADRVMLQVRAHSFGSAVTWPAGVTSPQTVQIDLNPDDALTERNVWRAVITATYRVFETNVLPTPTV |
Ga0335031_0084625_1913_2233 | F056554 | AGGA | MSISLGKDASAPPFGEGIISATFTEECETIDISNRSNIGGSAGAPGRRVSRAGFVTKTWEIECHDPDGLIASLTAAGTAGSFSIMSVSENIGIDGAVTYNVTAKEF |
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