NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0169499

Scaffold Ga0335031_0169499


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0169499 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1498
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013755Metagenome / Metatranscriptome268Y
F029732Metagenome / Metatranscriptome187Y
F058715Metagenome134N
F059002Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0169499_1184_1366F029732AGGMKYLSKTKPTVEVEFVSEAQLRIGETKRLCVIYQRGEIFYVRPKAEFFDKFVLDESVIPS
Ga0335031_0169499_300_506F013755GGAGGMSDHIPDPTKMISDTPICDSTPHNVADLAMLCRKFERFAAVRLAYITQLETENDAMRADLLLWREAKP
Ga0335031_0169499_485_745F058715GGAVAGGKTVSLLEKLGLSKQSMEKMLGAVAPLKKTKIKRYRRYETVPADIRKAILEEHSSYTCRELAKKYGISSSTIWDIRDSKPKIK
Ga0335031_0169499_912_1187F059002N/AMNILNEIKSGISRLLGVHKTLETKEAPTTLKPKRSPKRGRGRPKGLKIPREIVDAVLQADKSVTNKQLAAKYRVSYFWVWSVRSKKLRLKR
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