NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0266188

Scaffold Ga0335031_0266188


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0266188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002170Metagenome587Y
F033720Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0266188_3_473F033720N/AIEKFIGFLNETGIPSLNAFIAGLTGAGGLNQGFTETQKSAESFGKGIAVIGGIISGFITFLREAIGLLVSFGNAAITAINVIPGVNVGSIPNPAPSAGRSSLPNVPTPSGSTFGGRGMGQINNITVNAIDGEGAARAVARTLNSQAARSTTALRNR
Ga0335031_0266188_473_1129F002170N/AMSAFTPNWKLIVSGVDYTDIAISDVQHSAGRSDIYQQPLPSYCQITLIALSGQTLPFDINDSFDLQVKDSTGSYVSLFGGDITDVTVEVGATGATATVIQYTLLAMGSLTRLTKEIWDDNISQDEDGNQIYEILSSILLGTWNDVPAASTWATYNATETWANAVNLGLGEIDQPGLYTMTAQSNLTDTIYNVVTDIANSAFGYLYEDNAGNIGYADADH
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