NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0002647

Scaffold Ga0335035_0002647


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0002647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12638
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039136Metagenome164N
F065771Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0002647_12085_12525F065771N/AMGGVQKYLTRQVQDGEISKDDLLESQRKLSLLNQAPKLVLSAIAKGWIKYPDKLETITEEEETAKWINTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMKSLGHTIVSIPSKATVQEHITNAKSKTKSKQ
Ga0335035_0002647_6670_6924F039136N/AMTIEIKYTASVFTPAGWRGVTIRATATKTSEKMALIVEVLEIDGEAPKSQMSRTGANRQRFNGNSISCREVGAKKRLSACEILN
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